PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G229100.1
Common NameB456_002G229100, LOC105786228
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 361aa    MW: 39925.7 Da    PI: 6.4343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G229100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08203250455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Gorai.002G229100.1 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250
                         8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-8197254No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESNAGTTET RSNVTVPDGG EVAAFESLQF TDEIHRLISA PATDNASSFT ALLELPATQV  60
VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNEKSNSPE  120
MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKTATNE  180
RLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD  240
EIINHVQSLQ RQVEFLSMRL ATVNPRIDFN LDSLFTPESG STMDGGNFPS LVTPLMWPDV  300
QVNGYRQQFQ HQWHFDTLKQ PIWGREEVCN NYVTLENSLL SYDSSANSAT LHANQLKMEL  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468025.10.0PREDICTED: transcription factor bHLH48-like isoform X2
SwissprotQ3EAI18e-96BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A0D2QHH60.0A0A0D2QHH6_G
STRINGGLYMA19G32570.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-106bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]